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Abstract Lake surfaces are warming worldwide, raising concerns about lake organism responses to thermal habitat changes. Species may cope with temperature increases by shifting their seasonality or their depth to track suitable thermal habitats, but these responses may be constrained by ecological interactions, life histories or limiting resources. Here we use 32 million temperature measurements from 139 lakes to quantify thermal habitat change (percentage of non-overlap) and assess how this change is exacerbated by potential habitat constraints. Long-term temperature change resulted in an average 6.2% non-overlap between thermal habitats in baseline (1978–1995) and recent (1996–2013) time periods, with non-overlap increasing to 19.4% on average when habitats were restricted by season and depth. Tropical lakes exhibited substantially higher thermal non-overlap compared with lakes at other latitudes. Lakes with high thermal habitat change coincided with those having numerous endemic species, suggesting that conservation actions should consider thermal habitat change to preserve lake biodiversity. 

Pelagic copepods often couple the classical and microbial food webs by feeding on microzooplankton (e.g. ciliates) in oligotrophic aquatic systems, and this consumption can trigger trophic cascades within the microbial food web. Consumption of mixotrophic microzooplankton, which are both autotrophic and heterotrophic within the same individual, is of particular interest because of its influence on carbon transfer efficiency within aquatic food webs.

In Lake Baikal, Siberia, it is unknown how carbon from a well‐developed microbial food web present during summer stratification moves into higher trophic levels within the classical food web.

We conducted in situ experiments in August 2015 to test the hypotheses that: (a)  the lake's dominant endemic copepod (Epischura baikalensis), previously assumed to be an herbivore feeding on diatoms, connects the microbial and classical food webs by ingesting ciliates; and (b) this feeding initiates top‐down effects within the microbial food web.

Our results supported these hypotheses.E. baikalensisindividuals consumed on average 101–161 ciliates per day, obtaining 96%–98% of their ingested carbon from ciliates and the remainder from small diatoms. Clearly,E. baikalensisis omnivorous, and it is probably channelling more primary production from both the microbial food web and the classical food web of Lake Baikal to higher trophic levels than any other pelagic consumer.

Most ciliates consumed were a mixotrophic oligotrich and such taxa are often abundant in summer in other oligotrophic lakes. Consumption of these mixotrophs is likely to boost substantially the transfer efficiency of biomass to higher trophic levels with potential implications for fish production, but this has seldom been investigated in oligotrophic lakes.

Feeding ofE. baikalensisinitiated a three‐link predatory cascade which reduced the abundance of ciliates and elevated growth rates of heterotrophic nanoflagellates but did not affect abundance or growth rates of autotrophic picoplankton. This demonstration of a potential trophic cascade in Lake Baikal indicates that investigations at larger spatial–temporal scales are needed to identify the conditions promoting or precluding trophic cascades in this lake.

 

Abstract Climate change and other anthropogenic stressors have led to long-term changes in the thermal structure, including surface temperatures, deepwater temperatures, and vertical thermal gradients, in many lakes around the world. Though many studies highlight warming of surface water temperatures in lakes worldwide, less is known about long-term trends in full vertical thermal structure and deepwater temperatures, which have been changing less consistently in both direction and magnitude. Here, we present a globally-expansive data set of summertime in-situ vertical temperature profiles from 153 lakes, with one time series beginning as early as 1894. We also compiled lake geographic, morphometric, and water quality variables that can influence vertical thermal structure through a variety of potential mechanisms in these lakes. These long-term time series of vertical temperature profiles and corresponding lake characteristics serve as valuable data to help understand changes and drivers of lake thermal structure in a time of rapid global and ecological change. 

Abstract Globally, lake surface water temperatures have warmed rapidly relative to air temperatures, but changes in deepwater temperatures and vertical thermal structure are still largely unknown. We have compiled the most comprehensive data set to date of long-term (1970–2009) summertime vertical temperature profiles in lakes across the world to examine trends and drivers of whole-lake vertical thermal structure. We found significant increases in surface water temperatures across lakes at an average rate of + 0.37 °C decade −1 , comparable to changes reported previously for other lakes, and similarly consistent trends of increasing water column stability (+ 0.08 kg m −3 decade −1 ). In contrast, however, deepwater temperature trends showed little change on average (+ 0.06 °C decade −1 ), but had high variability across lakes, with trends in individual lakes ranging from − 0.68 °C decade −1 to + 0.65 °C decade −1 . The variability in deepwater temperature trends was not explained by trends in either surface water temperatures or thermal stability within lakes, and only 8.4% was explained by lake thermal region or local lake characteristics in a random forest analysis. These findings suggest that external drivers beyond our tested lake characteristics are important in explaining long-term trends in thermal structure, such as local to regional climate patterns or additional external anthropogenic influences. 

Climate warming impacts ecosystems through multiple interacting pathways, including via direct thermal responses of individual taxa and the combined responses of closely interacting species. In this study, we examined how warming and infection by an oomycete parasite (Saprolegnia) affect the dominant zooplankter of Russia's Lake Baikal, the endemic copepodEpischurella baikalensis. We used a combination of laboratory experiments, long‐term monitoring data, and population modeling. Experiments showed a large difference in the thermal optima of host and parasite, with strong negative effects of warm temperatures onE. baikalensissurvival and reproduction and a negative effect ofSaprolegniainfection on survival.Saprolegniainfection had an unexpected positive effect onE. baikalensisreproductive output, which may be consistent with fecundity compensation by females exposed to the parasite. Long‐term monitoring data suggested thatSaprolegniainfections were most common during the warmest periods of the year. Population models, parameterized with experimental and literature data, correctly predicted the timing ofSaprolegniaepizootics, but overestimated the negative effect of warming onE. baikalensispopulations. Models suggest that diel vertical migration may allowE. baikalensisto escape the negative effects of increasing temperatures and parasitism and enableE. baikalensisto persist in the face of moderate warming of Lake Baikal. Our results contribute to understanding of how warming and parasitism interact to affect the pelagic ecosystems of cold lakes and oceans and how the consequences of these interacting stressors can vary seasonally, spatially, and interannually.